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stui  (New England Biolabs)


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    Structured Review

    New England Biolabs stui
    Stui, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 646 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stui/StuI/pm42020383-213-20-21
    Average 96 stars, based on 646 article reviews
    stui - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Transgenic Assay:

    Article Title: Synergistic engineering of Casδ nuclease for robust genome editing.
    Article Snippet: .. For maize stable transgenic line editing, the codon‐ optimized enCasδ was cloned to the StuI (NEB)‐digested pBUE411 vector (Xing et al., 2014). ..

    Clone Assay:

    Article Title: Synergistic engineering of Casδ nuclease for robust genome editing.
    Article Snippet: .. For maize stable transgenic line editing, the codon‐ optimized enCasδ was cloned to the StuI (NEB)‐digested pBUE411 vector (Xing et al., 2014). ..

    Article Title: The AltR transcription factor responds to plant thiosulfinates to regulate gene expression in a bacterial pathogen of onion
    Article Snippet: .. The bacterial promoter P altR , intergenic region of P. ananatis altG and altR , was synthesized as a dsDNA gblock by IDT (Table S4.) and cloned into the StuI and DraIII double - digested backbone of pTn5/7LuxK6 via Gibson assembly (New England Biolab). ..

    Article Title: Generation of ALK1 p.Gly48Glu mutant LUMCi029-A-3 for modeling Hereditary hemorrhagic telangiectasia type 2.
    Article Snippet: .. Clones carrying the mutation were identified by StuI (New England Biolabs, #R0187S) restriction digest and validated by Sanger sequencing. ..

    Plasmid Preparation:

    Article Title: Synergistic engineering of Casδ nuclease for robust genome editing.
    Article Snippet: .. For maize stable transgenic line editing, the codon‐ optimized enCasδ was cloned to the StuI (NEB)‐digested pBUE411 vector (Xing et al., 2014). ..

    Article Title: An antiviral jacalin-like lectin gene contributes to nonhost resistance and host determination of potexviruses among Brassicaceae.
    Article Snippet: .. Those three fragments were assembled with KpnI-HF and StuI (NEB) digested pKI1.1R vector using NEBuilder® HiFi DNA Assembly Master Mix (NEB), yielding in pFK202 vector, where the insert gene is expressed with an N-terminal FLAG tag under the control of the 35S promoter and HSP terminator. ..

    Article Title: A human-specific RPGR isoform and a clinically approved Rho/ROCK inhibitor ameliorate defects associated with RPGR dysfunction
    Article Snippet: This vector contains three BbsI (New England Biolabs) cutting sites, which complicates the cloning of sgRNAs due to unintended cleavage. .. Hence, the plasmid modification was done by removing the additional BbsI site using NruI (NEB) and StuI (NEB) enzymes. .. To create the KO of all RPGR isoforms (designated as RPGR_KO1), a single guide RNA (sgRNA) targeting exon 2 (5′-CTCCACATGAAAGATGTACA-3′) was designed using CHOPCHOP ( https://chopchop.cbu.uib.no/ ) and cloned into the KA2601 eSpCas9-G2P vector using BbsI (NEB).

    Construct:

    Article Title: U7 small nuclear RNA splice-switching therapeutics for STMN2 and UNC13A in Amyotrophic Lateral Sclerosis
    Article Snippet: The U7 SmOPT expression cassettes for testing in 293T cells were ordered as gene synthesis in pMK with a CMV-driven blasticidin resistance (GeneArt, Life Technologies). .. To generate the constructs targeting cryptic exons, these constructs were digested with StuI and HindIII (New England Biolabs). .. DNA strings with 15 bp overhangs upstream and downstream of the StuI, HindIII cleavage sites containing the U7 SmOPT sequence with the antisense sequence were designed as described above and cloned into the StuI and HindIII digested U7SmOPT plasmid using InFusion Snap Assembly EcoDry Master Mix (Takara) according to the manufacturer’s instructions.

    FLAG-tag:

    Article Title: An antiviral jacalin-like lectin gene contributes to nonhost resistance and host determination of potexviruses among Brassicaceae.
    Article Snippet: .. Those three fragments were assembled with KpnI-HF and StuI (NEB) digested pKI1.1R vector using NEBuilder® HiFi DNA Assembly Master Mix (NEB), yielding in pFK202 vector, where the insert gene is expressed with an N-terminal FLAG tag under the control of the 35S promoter and HSP terminator. ..

    Control:

    Article Title: An antiviral jacalin-like lectin gene contributes to nonhost resistance and host determination of potexviruses among Brassicaceae.
    Article Snippet: .. Those three fragments were assembled with KpnI-HF and StuI (NEB) digested pKI1.1R vector using NEBuilder® HiFi DNA Assembly Master Mix (NEB), yielding in pFK202 vector, where the insert gene is expressed with an N-terminal FLAG tag under the control of the 35S promoter and HSP terminator. ..

    Synthesized:

    Article Title: The AltR transcription factor responds to plant thiosulfinates to regulate gene expression in a bacterial pathogen of onion
    Article Snippet: .. The bacterial promoter P altR , intergenic region of P. ananatis altG and altR , was synthesized as a dsDNA gblock by IDT (Table S4.) and cloned into the StuI and DraIII double - digested backbone of pTn5/7LuxK6 via Gibson assembly (New England Biolab). ..

    Extraction:

    Article Title: Profiling KRAS mutations in whole blood by error-corrected maximum depth sequencing.
    Article Snippet: .. For each sample, two replicate library preparations were performed for the forward strand, reverse strand, or both as follows: 5 μg of genomic DNA from whole blood extraction above was mixed with 5 μL of rCutsmart buffer (NEB catalogue #B6004S) and 2.5 μL of 10000U/mL StuI (NEB catalogue #R0187L, KRAS exon 2 forward strand) or HinfI (NEB catalogue # R0155L, KRAS exon 2 reverse strand), brought to a total volume of 50 μL with distilled H2O, and incubated at 37oC overnight. .. Digested DNA was purified with a Qiagen PCR purification kit (Qiagen Catalogue # 28104) according to manufacturer protocol and eluted in 66 μL of distilled H2O.

    Incubation:

    Article Title: Profiling KRAS mutations in whole blood by error-corrected maximum depth sequencing.
    Article Snippet: .. For each sample, two replicate library preparations were performed for the forward strand, reverse strand, or both as follows: 5 μg of genomic DNA from whole blood extraction above was mixed with 5 μL of rCutsmart buffer (NEB catalogue #B6004S) and 2.5 μL of 10000U/mL StuI (NEB catalogue #R0187L, KRAS exon 2 forward strand) or HinfI (NEB catalogue # R0155L, KRAS exon 2 reverse strand), brought to a total volume of 50 μL with distilled H2O, and incubated at 37oC overnight. .. Digested DNA was purified with a Qiagen PCR purification kit (Qiagen Catalogue # 28104) according to manufacturer protocol and eluted in 66 μL of distilled H2O.

    Article Title: Discovery of molecular glues that bind FKBP12 and structurally distinct targets using DNA-encoded libraries.
    Article Snippet: .. A 20.0 μL sample of post-selection DNA-encoded compounds was added to 56.5 μL of CutSmart buffer containing 1.0 unit of StuI (New England Biolabs) in a 96-well PCR plate and the samples were incubated at 37 °C. .. DNA was then purified with a ChargeSwitch PCR clean-Up Kit (ThermoFisher) according to the manufacturers protocol on a KingFisher Duo system.

    Polymerase Chain Reaction:

    Article Title: Discovery of molecular glues that bind FKBP12 and structurally distinct targets using DNA-encoded libraries.
    Article Snippet: .. A 20.0 μL sample of post-selection DNA-encoded compounds was added to 56.5 μL of CutSmart buffer containing 1.0 unit of StuI (New England Biolabs) in a 96-well PCR plate and the samples were incubated at 37 °C. .. DNA was then purified with a ChargeSwitch PCR clean-Up Kit (ThermoFisher) according to the manufacturers protocol on a KingFisher Duo system.

    Mutagenesis:

    Article Title: Generation of ALK1 p.Gly48Glu mutant LUMCi029-A-3 for modeling Hereditary hemorrhagic telangiectasia type 2.
    Article Snippet: .. Clones carrying the mutation were identified by StuI (New England Biolabs, #R0187S) restriction digest and validated by Sanger sequencing. ..

    Sequencing:

    Article Title: Generation of ALK1 p.Gly48Glu mutant LUMCi029-A-3 for modeling Hereditary hemorrhagic telangiectasia type 2.
    Article Snippet: .. Clones carrying the mutation were identified by StuI (New England Biolabs, #R0187S) restriction digest and validated by Sanger sequencing. ..

    Modification:

    Article Title: A human-specific RPGR isoform and a clinically approved Rho/ROCK inhibitor ameliorate defects associated with RPGR dysfunction
    Article Snippet: This vector contains three BbsI (New England Biolabs) cutting sites, which complicates the cloning of sgRNAs due to unintended cleavage. .. Hence, the plasmid modification was done by removing the additional BbsI site using NruI (NEB) and StuI (NEB) enzymes. .. To create the KO of all RPGR isoforms (designated as RPGR_KO1), a single guide RNA (sgRNA) targeting exon 2 (5′-CTCCACATGAAAGATGTACA-3′) was designed using CHOPCHOP ( https://chopchop.cbu.uib.no/ ) and cloned into the KA2601 eSpCas9-G2P vector using BbsI (NEB).



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